3JXF Cell Adhesion date Sep 19, 2009
title Ca-Like Domain Of Human Ptprz
authors S.Bouyain
compound source
Molecule: Receptor-Type Tyrosine-Protein Phosphatase Zeta
Chain: A, B
Fragment: N-Terminal Ca-Like Domain (Unp Residues 34-302)
Synonym: R-Ptp-Zeta, R-Ptp-Zeta-2, Protein-Tyrosine Phospha Receptor Type Z Polypeptide 1, Protein-Tyrosine Phosphatase Type Z Polypeptide 2;
Ec: 3.1.3.48
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Htpzp2, Ptprz, Ptprz1, Ptprz2, Ptpz
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Origami2(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet32
symmetry Space Group: P 1 21 1
R_factor 0.175 R_Free 0.219
crystal
cell
length a length b length c angle alpha angle beta angle gamma
63.963 68.118 65.682 90.00 98.48 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand
enzyme Hydrolase E.C.3.1.3.48 BRENDA
Primary referenceThe protein tyrosine phosphatases PTPRZ and PTPRG bind to distinct members of the contactin family of neural recognition molecules., Bouyain S, Watkins DJ, Proc Natl Acad Sci U S A. 2010 Feb 9;107(6):2443-8. Epub 2010 Jan 21. PMID:20133774
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (187 Kb) [Save to disk]
  • Biological Unit Coordinates (3jxf.pdb1.gz) 92 Kb
  • Biological Unit Coordinates (3jxf.pdb2.gz) 93 Kb
  • CSU: Contacts of Structural Units for 3JXF
  • Structure Factors (235 Kb)
  • Retrieve 3JXF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3JXF from S2C, [Save to disk]
  • Re-refined 3jxf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3JXF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3JXF
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3JXF, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3jxf_A] [3jxf_B] [3jxf]
  • SWISS-PROT database: [P23471]
  • Domain organization of [PTPRZ_HUMAN] by SWISSPFAM
  • Domain found in 3JXF: [Carb_anhydrase ] by SMART
  • Other resources with information on 3JXF
  • Community annotation for 3JXF at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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