3JY9	Transferase	date	Sep 21, 2009
title	Janus Kinase 2 Inhibitors
authors	H.J.Zuccola, M.W.Ledeboer, A.C.Pierce
compound		source
Molecule: Tyrosine-Protein Kinase Jak2 Chain: A Fragment: Unp Residue 842-1130, Protein Kinase 2 Domain Synonym: Janus Kinase 2, Jak-2 Ec: 2.7.10.2 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Jak2 Expression_system: Baculovirus Expression_system_taxid: 10469 Expression_system_strain: Sf9 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pbev1
symmetry	Space Group: C 2 2 21	R_factor 0.195 R_Free 0.271
crystal cell	length a length b length c angle alpha angle beta angle gamma 95.103 101.257 68.488 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.10 Å
ligand	JZH, NA, PTR BindingDB	enzyme	Transferase E.C.2.7.10.2 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Janus kinase 2 inhibitors. Synthesis and characterization of a novel polycyclic azaindole., Wang T, Duffy JP, Wang J, Halas S, Salituro FG, Pierce AC, Zuccola HJ, Black JR, Hogan JK, Jepson S, Shlyakter D, Mahajan S, Gu Y, Hoock T, Wood M, Furey BF, Frantz JD, Dauffenbach LM, Germann UA, Fan B, Namchuk M, Bennani YL, Ledeboer MW, J Med Chem. 2009 Dec 24;52(24):7938-41. PMID:20014869

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (57 Kb) [Save to disk] Biological Unit Coordinates (3jy9.pdb1.gz) 52 Kb LPC: Ligand-Protein Contacts for 3JY9 CSU: Contacts of Structural Units for 3JY9 Structure Factors (718 Kb) Retrieve 3JY9 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3JY9 from S2C, [Save to disk] Re-refined 3jy9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3JY9 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3JY9

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3JY9, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3jy9_A] [3jy9] SWISS-PROT database: [O60674] Domain organization of [JAK2_HUMAN] by SWISSPFAM Domain found in 3JY9: [TyrKc ] by SMART

Other resources with information on 3JY9

Community annotation for 3JY9 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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