3JYN Oxidoreductase date Sep 22, 2009
title Crystal Structures Of Pseudomonas Syringae Pv. Tomato Dc3000 Oxidoreductase Complexed With Nadph
authors X.Pan, H.Zhang, Y.Gao, M.Li, W.Chang
compound source
Molecule: Quinone Oxidoreductase
Chain: A
Ec: 1.6.5.5
Engineered: Yes
Organism_scientific: Pseudomonas Syringae Pv. Tomato
Organism_taxid: 323
Strain: Dc3000
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-6p-1
symmetry Space Group: P 31 2 1
R_factor 0.205 R_Free 0.238
crystal
cell
length a length b length c angle alpha angle beta angle gamma
63.317 63.317 130.374 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.01 Å
ligand NDP enzyme Oxidoreductase E.C.1.6.5.5 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structures of Pseudomonas syringae pv. tomato DC3000 quinone oxidoreductase and its complex with NADPH., Pan X, Zhang H, Gao Y, Li M, Chang W, Biochem Biophys Res Commun. 2009 Dec 18;390(3):597-602. Epub 2009 Oct 8. PMID:19818736
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (59 Kb) [Save to disk]
  • Biological Unit Coordinates (3jyn.pdb1.gz) 108 Kb
  • LPC: Ligand-Protein Contacts for 3JYN
  • CSU: Contacts of Structural Units for 3JYN
  • Structure Factors (156 Kb)
  • Retrieve 3JYN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3JYN from S2C, [Save to disk]
  • Re-refined 3jyn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3JYN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3JYN
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3JYN, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3jyn] [3jyn_A]
  • SWISS-PROT database: [Q88B47]
  • Domain organization of [Q88B47_PSESM] by SWISSPFAM
  • Other resources with information on 3JYN
  • Community annotation for 3JYN at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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