3JZ4 Oxidoreductase date Sep 22, 2009
title Crystal Structure Of E. Coli Nadp Dependent Enzyme
authors C.G.Langendorf, T.L.G.Key, G.Fenalti, W.T.Kan, A.M.Buckle, T.Cara Davies, K.L.Tuck, R.H.P.Law, J.C.Whisstock
compound source
Molecule: Succinate-Semialdehyde Dehydrogenase [Nadp+]
Chain: A, B, C, D
Synonym: Ssdh, Nadp Dependent Enzyme
Ec: 1.2.1.16
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Strain: Mc1061
Gene: B2661, Gabd, Jw2636, Na
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Prsetc
symmetry Space Group: P 4 21 2
R_factor 0.168 R_Free 0.213
crystal
cell
length a length b length c angle alpha angle beta angle gamma
151.885 151.885 165.772 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand NAP enzyme Oxidoreductase E.C.1.2.1.16 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceThe X-ray crystal structure of Escherichia coli succinic semialdehyde dehydrogenase; structural insights into NADP+/enzyme interactions., Langendorf CG, Key TL, Fenalti G, Kan WT, Buckle AM, Caradoc-Davies T, Tuck KL, Law RH, Whisstock JC, PLoS One. 2010 Feb 18;5(2):e9280. PMID:20174634
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (303 Kb) [Save to disk]
  • Biological Unit Coordinates (3jz4.pdb1.gz) 293 Kb
  • LPC: Ligand-Protein Contacts for 3JZ4
  • CSU: Contacts of Structural Units for 3JZ4
  • Structure Factors (7724 Kb)
  • Retrieve 3JZ4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3JZ4 from S2C, [Save to disk]
  • Re-refined 3jz4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3JZ4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3JZ4
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3JZ4, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3jz4] [3jz4_D] [3jz4_B] [3jz4_A] [3jz4_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3JZ4
  • Community annotation for 3JZ4 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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