3JZK	Ligase	date	Sep 23, 2009
title	Crystal Structure Of Mdm2 With Chromenotriazolopyrimidine 1
authors	X.Huang
compound		source
Molecule: E3 Ubiquitin-Protein Ligase Mdm2 Chain: A Fragment: Mdm2 N-Terminal Domain, Residues 17-111 Synonym: P53-Binding Protein Mdm2, Oncoprotein Mdm2, Double Protein, Hdm2; Ec: 6.3.2.- Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Mdm2 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 41 21 2	R_factor 0.300 R_Free 0.320
crystal cell	length a length b length c angle alpha angle beta angle gamma 34.530 34.530 161.251 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.10 Å
ligand	YIN BindingDB	enzyme	Ligase E.C.6.3.2 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Discovery and Optimization of Chromenotriazolopyrimidines as Potent Inhibitors of the Mouse Double Minute 2-Tumor Protein 53 Protein-Protein Interaction., Allen JG, Bourbeau MP, Wohlhieter GE, Bartberger MD, Michelsen K, Hungate R, Gadwood RC, Gaston RD, Evans B, Mann LW, Matison ME, Schneider S, Huang X, Yu D, Andrews PS, Reichelt A, Long AM, Yakowec P, Yang EY, Lee TA, Oliner JD, J Med Chem. 2009 Nov 26;52(22):7044-7053. PMID:19856920

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (22 Kb) [Save to disk] Biological Unit Coordinates (3jzk.pdb1.gz) 17 Kb LPC: Ligand-Protein Contacts for 3JZK CSU: Contacts of Structural Units for 3JZK Structure Factors (52 Kb) Retrieve 3JZK in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3JZK from S2C, [Save to disk] Re-refined 3jzk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3JZK in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3JZK

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3JZK, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3jzk_A] [3jzk] SWISS-PROT database: [Q00987] Domain organization of [MDM2_HUMAN] by SWISSPFAM

Other resources with information on 3JZK

Community annotation for 3JZK at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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