3JZS	Ligase	date	Sep 24, 2009
title	Human Mdm2 Liganded With A 12mer Peptide Inhibitor (Pdiq)
authors	E.Schonbrunn, J.Phan
compound		source
Molecule: E3 Ubiquitin-Protein Ligase Mdm2 Chain: A Synonym: P53-Binding Protein Mdm2, Oncoprotein Mdm2, Double Protein, Hdm2; Ec: 6.3.2.- Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Mdm2 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21-Gold (De3) Plyss Expression_system_vector_type: Plasmid Expression_system_plasmid: Pdest-His-Mbp
Molecule: Pdiq Peptide (12mer) Chain: P Engineered: Yes		Synthetic: Yes
symmetry	Space Group: P 21 21 2	R_factor 0.215 R_Free 0.253
crystal cell	length a length b length c angle alpha angle beta angle gamma 43.810 50.593 39.204 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.78 Å
ligand	EDO	enzyme	Ligase E.C.6.3.2 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Structure-based design of high-affinity peptides inhibiting the interaction of p53 with MDM2 and MDMX., Phan J, Li Z, Kasprzak A, Li B, Sebti S, Guida W, Schonbrunn E, Chen J, J Biol Chem. 2009 Nov 12. PMID:19910468

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (22 Kb) [Save to disk] Biological Unit Coordinates (3jzs.pdb1.gz) 18 Kb LPC: Ligand-Protein Contacts for 3JZS CSU: Contacts of Structural Units for 3JZS Structure Factors (133 Kb) Retrieve 3JZS in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3JZS from S2C, [Save to disk] Re-refined 3jzs structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3JZS in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3JZS

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3JZS, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3jzs_P] [3jzs_A] [3jzs] SWISS-PROT database: [Q00987] Domain organization of [MDM2_HUMAN] by SWISSPFAM

Other resources with information on 3JZS

Community annotation for 3JZS at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---