3JZT Rna Binding Protein date Sep 24, 2009
title Structure Of A Cubic Crystal Form Of X (Adrp) Domain From Fcov With Adp-Ribose
authors J.A.Wojdyla, I.Manolaridis, P.A.Tucker
compound source
Molecule: Macro Domain Of Non-Structural Protein 3
Chain: A, B, C, D, E, F, G, H
Synonym: Adrp (X) Domain
Engineered: Yes
 Organism_scientific: Feline Coronavirus
Organism_common: Fcov
Organism_taxid: 33734
Strain: Fipv Wsu-791146
Gene: Rep, 1a-1b
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Petm11
symmetry Space Group: P 21 3
R_factor 0.199 R_Free 0.239
crystal
cell
length a length b length c angle alpha angle beta angle gamma
220.236 220.236 220.236 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.91 Å
ligand APR, CL, NA enzyme
Primary referenceStructure of the X (ADRP) domain of nsp3 from feline coronavirus., Wojdyla JA, Manolaridis I, Snijder EJ, Gorbalenya AE, Coutard B, Piotrowski Y, Hilgenfeld R, Tucker PA, Acta Crystallogr D Biol Crystallogr. 2009 Dec;65(Pt 12):1292-300. Epub, 2009 Nov 17. PMID:19966415
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (219 Kb) [Save to disk]
  • Biological Unit Coordinates (3jzt.pdb1.gz) 29 Kb
  • Biological Unit Coordinates (3jzt.pdb2.gz) 30 Kb
  • Biological Unit Coordinates (3jzt.pdb3.gz) 30 Kb
  • Biological Unit Coordinates (3jzt.pdb4.gz) 30 Kb
  • Biological Unit Coordinates (3jzt.pdb5.gz) 29 Kb
  • Biological Unit Coordinates (3jzt.pdb6.gz) 29 Kb
  • Biological Unit Coordinates (3jzt.pdb7.gz) 29 Kb
  • Biological Unit Coordinates (3jzt.pdb8.gz) 29 Kb
  • LPC: Ligand-Protein Contacts for 3JZT
  • CSU: Contacts of Structural Units for 3JZT
  • Structure Factors (533 Kb)
  • Retrieve 3JZT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3JZT from S2C, [Save to disk]
  • Re-refined 3jzt structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3JZT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3JZT
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3JZT, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3jzt_A] [3jzt] [3jzt_F] [3jzt_G] [3jzt_H] [3jzt_B] [3jzt_D] [3jzt_E] [3jzt_C]
  • SWISS-PROT database: [Q98VG9]
  • Domain organization of [R1AB_FIPV] by SWISSPFAM
  • Domain found in 3JZT: [A1pp ] by SMART
    • Other resources with information on 3JZT
  • Community annotation for 3JZT at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science