3K22	Transcription	date	Sep 29, 2009
title	Glucocorticoid Receptor With Bound Alaninamide 10 With Tif2
authors	K.B.Biggadike, I.M.Mclay, K.P.Madauss, S.P.Williams, R.K.Bledsoe
compound		source
Molecule: Glucocorticoid Receptor Chain: A, B Synonym: Gr, Nuclear Receptor Subfamily 3 Group C Member 1 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Grl, Nr3c1, Pgr Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Phis Gst
Molecule: Transcriptional Intermediary Factor 2 Chain: H, D Engineered: Yes		Synthetic: Yes Other_details: Purchased
symmetry	Space Group: P 61	R_factor 0.211 R_Free 0.255
crystal cell	length a length b length c angle alpha angle beta angle gamma 127.597 127.597 78.230 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.10 Å
ligand	JZR, JZS	enzyme
Primary reference	Design and x-ray crystal structures of high-potency nonsteroidal glucocorticoid agonists exploiting a novel binding site on the receptor., Biggadike K, Bledsoe RK, Coe DM, Cooper TW, House D, Iannone MA, Macdonald SJ, Madauss KP, McLay IM, Shipley TJ, Taylor SJ, Tran TB, Uings IJ, Weller V, Williams SP, Proc Natl Acad Sci U S A. 2009 Oct 12. PMID:19822747

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (92 Kb) [Save to disk] Biological Unit Coordinates (3k22.pdb1.gz) 44 Kb Biological Unit Coordinates (3k22.pdb2.gz) 44 Kb LPC: Ligand-Protein Contacts for 3K22 CSU: Contacts of Structural Units for 3K22 Structure Factors (609 Kb) Retrieve 3K22 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3K22 from S2C, [Save to disk] Re-refined 3k22 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3K22 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3K22

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3K22, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3k22_H] [3k22] [3k22_D] [3k22_B] [3k22_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3K22: [HOLI ] by SMART

Other resources with information on 3K22

Community annotation for 3K22 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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