3K2H Transferase date Sep 30, 2009
title Co-Crystal Structure Of Dihydrofolate Reductasethymidylate From Babesia Bovis With Dump, Pemetrexed And Nadp
authors Seattle Structural Genomics Center For Infectious Disease (S
compound source
Molecule: Dihydrofolate Reductasethymidylate Synthase
Chain: A, B
Ec: 2.1.1.45
Engineered: Yes
Organism_scientific: Babesia Bovis
Organism_taxid: 5865
Gene: Bbov_ii000780
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Pbadsmt
symmetry Space Group: P 1
R_factor 0.190 R_Free 0.239
crystal
cell
length a length b length c angle alpha angle beta angle gamma
51.144 83.196 83.378 119.69 90.85 101.71
method X-Ray Diffractionresolution 2.20 Å
ligand EDO, LYA, NAP, UMP enzyme Transferase E.C.2.1.1.45 BRENDA
Gene BBOV
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceInhibitor-bound complexes of dihydrofolate reductase-thymidylate synthase from Babesia bovis., Begley DW, Edwards TE, Raymond AC, Smith ER, Hartley RC, Abendroth J, Sankaran B, Lorimer DD, Myler PJ, Staker BL, Stewart LJ, Acta Crystallogr Sect F Struct Biol Cryst Commun. 2011 Sep 1;67(Pt, 9):1070-7. Epub 2011 Aug 16. PMID:21904052
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (185 Kb) [Save to disk]
  • Biological Unit Coordinates (3k2h.pdb1.gz) 178 Kb
  • LPC: Ligand-Protein Contacts for 3K2H
  • CSU: Contacts of Structural Units for 3K2H
  • Structure Factors (891 Kb)
  • Retrieve 3K2H in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3K2H from S2C, [Save to disk]
  • Re-refined 3k2h structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3K2H in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3K2H
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3K2H, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3k2h_B] [3k2h] [3k2h_A]
  • SWISS-PROT database: [A7ASX7]
  • Domain organization of [A7ASX7_BABBO] by SWISSPFAM
  • Other resources with information on 3K2H
  • Community annotation for 3K2H at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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