3K5V	Transferase	date	Oct 08, 2009
title	Structure Of Abl Kinase In Complex With Imatinib And Gnf-2
authors	S.W.Cowan-Jacob, G.Fendrich, G.Rummel, A.Strauss
compound		source
Molecule: Tyrosine-Protein Kinase Abl1 Chain: A, B Fragment: Kinase Domain (Unp Residues 229 To 515) Synonym: Abelson Murine Leukemia Viral Oncogene Homolog 1, Oncogene C-Abl, P150; Ec: 2.7.10.2 Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: Mouse Organism_taxid: 10090 Gene: Abl, Abl1 Expression_system: Spodoptera Frugiperda Expression_system_taxid: 7108
symmetry	Space Group: P 1	R_factor 0.199 R_Free 0.231
crystal cell	length a length b length c angle alpha angle beta angle gamma 42.070 65.268 66.259 72.82 80.25 84.86
method	X-Ray Diffraction	resolution	1.74 Å
ligand	CL, STI, STJ BindingDB	enzyme	Transferase E.C.2.7.10.2 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Targeting Bcr-Abl by combining allosteric with ATP-binding-site inhibitors., Zhang J, Adrian FJ, Jahnke W, Cowan-Jacob SW, Li AG, Iacob RE, Sim T, Powers J, Dierks C, Sun F, Guo GR, Ding Q, Okram B, Choi Y, Wojciechowski A, Deng X, Liu G, Fendrich G, Strauss A, Vajpai N, Grzesiek S, Tuntland T, Liu Y, Bursulaya B, Azam M, Manley PW, Engen JR, Daley GQ, Warmuth M, Gray NS, Nature. 2010 Jan 13. PMID:20072125

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (109 Kb) [Save to disk] Biological Unit Coordinates (3k5v.pdb1.gz) 55 Kb Biological Unit Coordinates (3k5v.pdb2.gz) 51 Kb LPC: Ligand-Protein Contacts for 3K5V CSU: Contacts of Structural Units for 3K5V Structure Factors (957 Kb) Retrieve 3K5V in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3K5V from S2C, [Save to disk] Re-refined 3k5v structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3K5V in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3K5V

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3K5V, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3k5v] [3k5v_A] [3k5v_B] SWISS-PROT database: [P00521] Domain organization of [ABL_MLVAB] by SWISSPFAM Domain found in 3K5V: [TyrKc ] by SMART

Other resources with information on 3K5V

Community annotation for 3K5V at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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