3K6R Transferase date Oct 09, 2009
title Crystal Structure Of Putative Transferase Ph0793 From Pyroco Horikoshii
authors C.Chang, T.Skarina, A.Savchenko, A.Edwards, A.Joachimiak, Midwest For Structural Genomics (Mcsg)
compound source
Molecule: Putative Transferase Ph0793
Chain: A
Engineered: Yes
 Organism_scientific: Pyrococcus Horikoshii
Organism_taxid: 53953
Strain: Ot3
Gene: Ph0793
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3) Derivatives
symmetry Space Group: P 1 21 1
R_factor 0.211 R_Free 0.256
crystal
cell
length a length b length c angle alpha angle beta angle gamma
51.308 54.231 58.613 90.00 100.02 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand MSE enzyme
note 3K6R supersedes 2FRN
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (50 Kb) [Save to disk]
  • Biological Unit Coordinates (3k6r.pdb1.gz) 45 Kb
  • LPC: Ligand-Protein Contacts for 3K6R
  • CSU: Contacts of Structural Units for 3K6R
  • Structure Factors (332 Kb)
  • Retrieve 3K6R in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3K6R from S2C, [Save to disk]
  • Re-refined 3k6r structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3K6R in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3K6R
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3K6R, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3k6r] [3k6r_A]
  • SWISS-PROT database: [O58523]
  • Domain organization of [O58523_PYRHO] by SWISSPFAM
    • Other resources with information on 3K6R
  • Community annotation for 3K6R at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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