3K80 Immune System, Rna Binding Protein date Oct 13, 2009
title Structure Of Essential Protein From Trypanosoma Brucei
authors M.Wu
compound source
Molecule: Antibody
Chain: A, B
Engineered: Yes
Organism_scientific: Lama Glama
Organism_taxid: 9844
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Mp18 Rna Editing Complex Protein
Chain: D, C
Engineered: Yes

Organism_scientific: Trypanosoma Brucei
Organism_taxid: 5691
Gene: Tb10.70.2090
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.223 R_Free 0.277
crystal
cell
length a length b length c angle alpha angle beta angle gamma
120.278 52.499 85.845 90.00 104.61 90.00
method X-Ray Diffractionresolution 2.40 Å
Gene
Ontology
ChainFunctionProcessComponent
D, C


Primary referenceStructures of a key interaction protein from the Trypanosoma brucei editosome in complex with single domain antibodies., Wu M, Park YJ, Pardon E, Turley S, Hayhurst A, Deng J, Steyaert J, Hol WG, J Struct Biol. 2010 Oct 20. PMID:20969962
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (72 Kb) [Save to disk]
  • Biological Unit Coordinates (3k80.pdb1.gz) 67 Kb
  • CSU: Contacts of Structural Units for 3K80
  • Structure Factors (299 Kb)
  • Retrieve 3K80 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3K80 from S2C, [Save to disk]
  • Re-refined 3k80 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3K80 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3K80
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3K80, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3k80_B] [3k80] [3k80_A] [3k80_D] [3k80_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3K80: [IGv ] by SMART
  • Other resources with information on 3K80
  • Community annotation for 3K80 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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