3K9C Transcription Regulator date Oct 15, 2009
title Crystal Structure Of Laci Transcriptional Regulator From Rho Species.
authors L.Damodharan, S.K.Burley, S.Swaminathan, New York Sgx Research For Structural Genomics (Nysgxrc)
compound source
Molecule: Transcriptional Regulator, Laci Family Protein
Chain: A, B
Engineered: Yes
Organism_scientific: Rhodococcus Jostii
Organism_taxid: 101510
Strain: Rha1
Gene: Rha1_ro05266
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Psgx3(Bc)
symmetry Space Group: C 2 2 21
R_factor 0.209 R_Free 0.243
crystal
cell
length a length b length c angle alpha angle beta angle gamma
98.435 100.543 106.433 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.14 Å
ligand GOL, MSE enzyme
Gene RHA1
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (90 Kb) [Save to disk]
  • Biological Unit Coordinates (3k9c.pdb1.gz) 83 Kb
  • LPC: Ligand-Protein Contacts for 3K9C
  • CSU: Contacts of Structural Units for 3K9C
  • Structure Factors (233 Kb)
  • Retrieve 3K9C in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3K9C from S2C, [Save to disk]
  • Re-refined 3k9c structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3K9C in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3K9C
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3K9C, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3k9c] [3k9c_A] [3k9c_B]
  • SWISS-PROT database: [Q0S5Y9]
  • Domain organization of [Q0S5Y9_RHOSR] by SWISSPFAM
  • Other resources with information on 3K9C
  • Community annotation for 3K9C at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science