3KAA	Immune System	date	Oct 19, 2009
title	Structure Of Tim-3 In Complex With Phosphatidylserine
authors	A.Ballesteros, C.Santiago, J.M.Casasnovas
compound		source
Molecule: Hepatitis A Virus Cellular Receptor 2 Chain: A, B Fragment: N-Terminal Cys-Rich Domain Synonym: T-Cell Immunoglobulin And Mucin Domain-Containing Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: Mouse Organism_taxid: 10090 Strain: Balbc Gene: Havcr2, Hepatitis A Virus Cellular Receptor 2, Tim3, Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet-27b
symmetry	Space Group: H 3 2	R_factor 0.235 R_Free 0.245
crystal cell	length a length b length c angle alpha angle beta angle gamma 71.922 71.922 263.579 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	3.00 Å
ligand	CA, PSF	enzyme
Primary reference	T cell/transmembrane, Ig, and mucin-3 allelic variants differentially recognize phosphatidylserine and mediate phagocytosis of apoptotic cells., DeKruyff RH, Bu X, Ballesteros A, Santiago C, Chim YL, Lee HH, Karisola P, Pichavant M, Kaplan GG, Umetsu DT, Freeman GJ, Casasnovas JM, J Immunol. 2010 Feb 15;184(4):1918-30. Epub 2010 Jan 18. PMID:20083673

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (79 Kb) [Save to disk] Biological Unit Coordinates (3kaa.pdb1.gz) 37 Kb Biological Unit Coordinates (3kaa.pdb2.gz) 38 Kb LPC: Ligand-Protein Contacts for 3KAA CSU: Contacts of Structural Units for 3KAA Structure Factors (261 Kb) Retrieve 3KAA in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3KAA from S2C, [Save to disk] Re-refined 3kaa structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3KAA, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3kaa_B] [3kaa_A] [3kaa] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3KAA: [IG ] by SMART

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Community annotation for 3KAA at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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