3KAG	Isomerase	date	Oct 19, 2009
title	Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1 Inh
authors	L.M.Baker, P.Dokurno, D.A.Robinson, A.E.Surgenor, J.B.Murray, A.J J.D.Moore
compound		source
Molecule: Peptidyl-Prolyl Cis-Trans Isomerase Nima-Interact Chain: A Synonym: Rotamase Pin1, Ppiase Pin1 Ec: 5.2.1.8 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Pin1 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21 (De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28a
symmetry	Space Group: P 31 2 1	R_factor 0.202 R_Free 0.255
crystal cell	length a length b length c angle alpha angle beta angle gamma 68.504 68.504 79.560 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	1.90 Å
ligand	12P, 4D7 BindingDB	enzyme	Isomerase E.C.5.2.1.8 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Structure-guided design of alpha-amino acid-derived Pin1 inhibitors., Potter AJ, Ray S, Gueritz L, Nunns CL, Bryant CJ, Scrace SF, Matassova N, Baker L, Dokurno P, Robinson DA, Surgenor AE, Davis B, Murray JB, Richardson CM, Moore JD, Bioorg Med Chem Lett. 2009 Nov 22. PMID:19969456

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (33 Kb) [Save to disk] Biological Unit Coordinates (3kag.pdb1.gz) 27 Kb LPC: Ligand-Protein Contacts for 3KAG CSU: Contacts of Structural Units for 3KAG Structure Factors (250 Kb) Retrieve 3KAG in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3KAG from S2C, [Save to disk] Re-refined 3kag structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3KAG in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3KAG

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3KAG, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3kag_A] [3kag] SWISS-PROT database: [Q13526] Domain organization of [PIN1_HUMAN] by SWISSPFAM Domain found in 3KAG: [WW ] by SMART

Other resources with information on 3KAG

Community annotation for 3KAG at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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