3KB7 Transferase date Oct 20, 2009
title Crystal Structure Of Polo-Like Kinase 1 In Complex With A Pyrazoloquinazoline Inhibitor
authors R.T.Bossi, J.A.Bertrand
compound source
Molecule: Serinethreonine-Protein Kinase Plk1
Chain: A
Fragment: Kinase Domain
Synonym: Polo-Like Kinase 1, Plk-1, Serinethreonine-Protei 13, Stpk13;
Ec: 2.7.11.21
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Plk1
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: H5
Expression_system_vector_type: Baculovirus
symmetry Space Group: P 32 2 1
R_factor 0.208 R_Free 0.303
crystal
cell
length a length b length c angle alpha angle beta angle gamma
67.352 67.352 154.109 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.50 Å
ligand 071, NMM, TLA, ZN BindingDB enzyme Transferase E.C.2.7.11.21 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceIdentification of 4,5-dihydro-1H-pyrazolo[4,3-h]quinazoline derivatives as a new class of orally and selective Polo-like kinase 1 inhibitors., Beria I, Ballinari D, Bertrand JA, Borghi D, Bossi RT, Brasca MG, Cappella P, Caruso M, Ceccarelli W, Ciavolella A, Cristiani C, Croci V, De Ponti A, Fachin G, Ferguson RD, Lansen J, Moll JK, Pesenti E, Posteri H, Perego R, Rocchetti M, Storici P, Volpi D, Valsasina B, J Med Chem. 2010 May 13;53(9):3532-51. PMID:20397705
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk]
  • Biological Unit Coordinates (3kb7.pdb1.gz) 98 Kb
  • LPC: Ligand-Protein Contacts for 3KB7
  • CSU: Contacts of Structural Units for 3KB7
  • Structure Factors (747 Kb)
  • Retrieve 3KB7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3KB7 from S2C, [Save to disk]
  • Re-refined 3kb7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3KB7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3KB7
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3KB7, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3kb7_A] [3kb7]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3KB7: [S_TKc ] by SMART
  • Other resources with information on 3KB7
  • Community annotation for 3KB7 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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