3KBJ	Isomerase	date	Oct 20, 2009
title	Room Temperature X-Ray Structure Of Apo-D-Xylose Isomerase
authors	A.Y.Kovalevsky, L.Hanson, P.Langan
compound		source
Molecule: Xylose Isomerase Chain: A Ec: 5.3.1.5 Engineered: Yes Other_details: The Protein Was Purchased From Hampton Resea		Organism_scientific: Streptomyces Rubiginosus Organism_taxid: 1929 Gene: Xyla
symmetry	Space Group: I 2 2 2	R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma 94.040 99.520 102.470 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.00 Å
ligand		enzyme	Isomerase E.C.5.3.1.5 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Identification of the Elusive Hydronium Ion Exchanging Roles with a Proton in an Enzyme at Lower pH Values., Kovalevsky AY, Hanson BL, Mason SA, Yoshida T, Fisher SZ, Mustyakimov M, Forsyth VT, Blakeley MP, Keen DA, Langan P, Angew Chem Int Ed Engl. 2011 Aug 8;50(33):7520-3. doi:, 10.1002/anie.201101753. Epub 2011 May 23. PMID:21604345

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (70 Kb) [Save to disk] Biological Unit Coordinates (3kbj.pdb1.gz) 259 Kb CSU: Contacts of Structural Units for 3KBJ Structure Factors (349 Kb) Retrieve 3KBJ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3KBJ from S2C, [Save to disk] Re-refined 3kbj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3KBJ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3KBJ

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3KBJ, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3kbj] [3kbj_A] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 3KBJ

Community annotation for 3KBJ at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---