3KF7 Transferase date Oct 27, 2009
title Crystal Structure Of Human P38alpha Complexed With A Triazolopyrimidine Compound
authors H.S.Shieh, J.M.Williams, R.A.Stegeman, L.Xing, K.D.Jerome
compound source
Molecule: Mitogen-Activated Protein Kinase 14
Chain: A
Synonym: Mitogen-Activated Protein Kinase P38 Alpha, Map Ki Alpha, Cytokine Suppressive Anti-Inflammatory Drug-Binding Csaid-Binding Protein, Csbp, Max-Interacting Protein 2, Map Mxi2, Sapk2a;
Ec: 2.7.11.24
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Csbp, Csbp1, Csbp2, Cspb1, Mapk14, Mxi2, Thp-1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Dh10b
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex4t-1
symmetry Space Group: P 21 21 21
R_factor 0.233 R_Free 0.274
crystal
cell
length a length b length c angle alpha angle beta angle gamma
65.068 74.329 77.617 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand L9G enzyme Transferase E.C.2.7.11.24 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceContinued exploration of the triazolopyridine scaffold as a platform for p38 MAP kinase inhibition., Jerome KD, Rucker PV, Xing L, Shieh HS, Baldus JE, Selness SR, Letavic MA, Braganza JF, McClure KF, Bioorg Med Chem Lett. 2009 Nov 26. PMID:19969459
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (63 Kb) [Save to disk]
  • Biological Unit Coordinates (3kf7.pdb1.gz) 57 Kb
  • LPC: Ligand-Protein Contacts for 3KF7
  • CSU: Contacts of Structural Units for 3KF7
  • Structure Factors (371 Kb)
  • Retrieve 3KF7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3KF7 from S2C, [Save to disk]
  • Re-refined 3kf7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3KF7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3KF7
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3KF7, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3kf7] [3kf7_A]
  • SWISS-PROT database: [Q16539]
  • Domain organization of [MK14_HUMAN] by SWISSPFAM
  • Domain found in 3KF7: [S_TKc ] by SMART
  • Other resources with information on 3KF7
  • Community annotation for 3KF7 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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