3KGA	Transferase	date	Oct 28, 2009
title	Crystal Structure Of Mapkap Kinase 2 (Mk2) Complexed With A Aminopyrazole Atp Site Inhibitor
authors	M.Kroemer, J.Velcicky, A.Izaac, C.Be, C.Huppertz, D.Pflieger, A.Sc C.Scheufler
compound		source
Molecule: Map Kinase-Activated Protein Kinase 2 Chain: A Fragment: Kinase Domain Synonym: Mapk-Activated Protein Kinase 2, Mapkap Kinase 2, Mk2; Ec: 2.7.11.1 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Mapkapk2 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3)Tuner Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet
symmetry	Space Group: P 63 2 2	R_factor 0.180 R_Free 0.235
crystal cell	length a length b length c angle alpha angle beta angle gamma 103.120 103.120 165.415 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.55 Å
ligand	LX9, MG BindingDB	enzyme	Transferase E.C.2.7.11.1 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Novel 3-aminopyrazole inhibitors of MK-2 discovered by scaffold hopping strategy., Velcicky J, Feifel R, Hawtin S, Heng R, Huppertz C, Koch G, Kroemer M, Moebitz H, Revesz L, Scheufler C, Schlapbach A, Bioorg Med Chem Lett. 2009 Nov 3. PMID:20060294

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (56 Kb) [Save to disk] Biological Unit Coordinates (3kga.pdb1.gz) 50 Kb LPC: Ligand-Protein Contacts for 3KGA CSU: Contacts of Structural Units for 3KGA Structure Factors (241 Kb) Retrieve 3KGA in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3KGA from S2C, [Save to disk] Re-refined 3kga structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3KGA in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3KGA

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3KGA, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3kga_A] [3kga] SWISS-PROT database: [P49137] Domain organization of [MAPK2_HUMAN] by SWISSPFAM Domain found in 3KGA: [S_TKc ] by SMART

Other resources with information on 3KGA

Community annotation for 3KGA at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---