3KGG Hydrolase date Oct 29, 2009
title X-Ray Structure Of Perdeuterated Diisopropyl Fluorophosphata (Dfpase): Perdeuteration Of Proteins For Neutron Diffractio
authors M.M.Blum, S.J.Tomanicek, H.John, B.L.Hanson, H.R.Terjans, B.P.Sc P.Langan, J.C.H.Chen
compound source
Molecule: Diisopropyl-Fluorophosphatase
Chain: A
Synonym: Dfpase
Ec: 3.1.8.2
Engineered: Yes
Organism_scientific: Loligo Vulgaris
Organism_common: Common European Squid
Organism_taxid: 6622
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.176 R_Free 0.218
crystal
cell
length a length b length c angle alpha angle beta angle gamma
43.140 83.150 87.440 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand CA enzyme Hydrolase E.C.3.1.8.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceX-ray structure of perdeuterated diisopropyl fluorophosphatase (DFPase): perdeuteration of proteins for neutron diffraction., Blum MM, Tomanicek SJ, John H, Hanson BL, Ruterjans H, Schoenborn BP, Langan P, Chen JC, Acta Crystallogr Sect F Struct Biol Cryst Commun. 2010 Apr 1;66(Pt, 4):379-85. Epub 2010 Mar 26. PMID:20383004
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (58 Kb) [Save to disk]
  • Biological Unit Coordinates (3kgg.pdb1.gz) 54 Kb
  • LPC: Ligand-Protein Contacts for 3KGG
  • CSU: Contacts of Structural Units for 3KGG
  • Structure Factors (162 Kb)
  • Retrieve 3KGG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3KGG from S2C, [Save to disk]
  • Re-refined 3kgg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3KGG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3KGG
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3KGG, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3kgg] [3kgg_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3KGG
  • Community annotation for 3KGG at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science