3KH0 Signaling Protein date Oct 29, 2009
title Crystal Structure Of The Ras-Association (Ra) Domain Of Ralg
authors Y.Shen, W.Tempel, H.Wang, Y.Tong, X.Guan, L.Crombet, C.H.Arrowsmit A.M.Edwards, C.Bountra, J.Weigelt, A.Bochkarev, H.Park, Structur Genomics Consortium (Sgc)
compound source
Molecule: Ral Guanine Nucleotide Dissociation Stimulator
Chain: A, B
Synonym: Ralgds, Ralgef
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ralgds, Kiaa1308, Rgf
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21-V2r-Prare2
Expression_system_plasmid: Pet28-Mhl (Gi:134105571)
symmetry Space Group: P 61
R_factor 0.204 R_Free 0.226
crystal
cell
length a length b length c angle alpha angle beta angle gamma
104.590 104.590 39.819 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.10 Å
ligand UNX enzyme
note 3KH0 is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (38 Kb) [Save to disk]
  • Biological Unit Coordinates (3kh0.pdb1.gz) 34 Kb
  • Biological Unit Coordinates (3kh0.pdb2.gz) 34 Kb
  • LPC: Ligand-Protein Contacts for 3KH0
  • CSU: Contacts of Structural Units for 3KH0
  • Structure Factors (284 Kb)
  • Retrieve 3KH0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3KH0 from S2C, [Save to disk]
  • Re-refined 3kh0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3KH0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3KH0
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3KH0, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3kh0_A] [3kh0_B] [3kh0]
  • SWISS-PROT database: [Q12967]
  • Domain organization of [GNDS_HUMAN] by SWISSPFAM
  • Domain found in 3KH0: [RA ] by SMART
  • Other resources with information on 3KH0
  • Community annotation for 3KH0 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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