3KK9 Transferase date Nov 04, 2009
title Camkii Substrate Complex B
authors J.Kuriyan, L.H.Chao, P.Pellicena, S.Deindl, L.A.Barclay, H.Schulm
compound source
Molecule: Calciumcalmodulin Dependent Protein Kinase II
Chain: A
Fragment: Camkii Kinase Domain
Engineered: Yes
 Organism_scientific: Caenorhabditis Elegans
Organism_common: Nematode
Organism_taxid: 6239
Gene: Unc-43, K11e8.1, K11e8.1d
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.270 R_Free 0.329
crystal
cell
length a length b length c angle alpha angle beta angle gamma
37.708 60.470 70.243 90.00 93.92 90.00
method X-Ray Diffractionresolution 3.21 Å
ligand TPO enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceIntersubunit capture of regulatory segments is a component of cooperative CaMKII activation., Chao LH, Pellicena P, Deindl S, Barclay LA, Schulman H, Kuriyan J, Nat Struct Mol Biol. 2010 Mar;17(3):264-72. Epub 2010 Feb 7. PMID:20139983
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (97 Kb) [Save to disk]
  • Biological Unit Coordinates (3kk9.pdb1.gz) 182 Kb
  • Biological Unit Coordinates (3kk9.pdb2.gz) 92 Kb
  • LPC: Ligand-Protein Contacts for 3KK9
  • CSU: Contacts of Structural Units for 3KK9
  • Structure Factors (37 Kb)
  • Retrieve 3KK9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3KK9 from S2C, [Save to disk]
  • Re-refined 3kk9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3KK9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3KK9
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3KK9, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3kk9] [3kk9_A]
  • SWISS-PROT database: [Q9NH59]
  • Domain organization of [Q9NH59_CAEEL] by SWISSPFAM
  • Domain found in 3KK9: [S_TKc ] by SMART
    • Other resources with information on 3KK9
  • Community annotation for 3KK9 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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