3KLP Oxidoreductase date Nov 08, 2009
title 17beta-Hsd1 In Complex With A-Diol
authors M.Mazumdar, S.X.Lin
compound source
Molecule: Estradiol 17-Beta-Dehydrogenase 1
Chain: X
Synonym: 17-Beta-Hydroxysteroid Dehydrogenase Type 1, 17-Be Placental 17-Beta-Hydroxysteroid Dehydrogenase, 20 Alpha- Hydroxysteroid Dehydrogenase, 20-Alpha-Hsd, E2dh;
Ec: 1.1.1.62
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: C 1 2 1
R_factor 0.169 R_Free 0.254
crystal
cell
length a length b length c angle alpha angle beta angle gamma
122.440 44.020 60.980 90.00 99.70 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand B81 enzyme Oxidoreductase E.C.1.1.1.62 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
X


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (48 Kb) [Save to disk]
  • Biological Unit Coordinates (3klp.pdb1.gz) 85 Kb
  • LPC: Ligand-Protein Contacts for 3KLP
  • CSU: Contacts of Structural Units for 3KLP
  • Structure Factors (140 Kb)
  • Retrieve 3KLP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3KLP from S2C, [Save to disk]
  • Re-refined 3klp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3KLP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3KLP
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3KLP, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3klp] [3klp_X]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3KLP
  • Community annotation for 3KLP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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