3KM2	Oxidoreductase	date	Nov 09, 2009
title	As-Isolated Tomato Chloroplast Superoxide Dismutase
authors	A.Galaleldeen, A.B.Taylor, P.J.Hart
compound		source
Molecule: Superoxide Dismutase [Cu-Zn], Chloroplastic Chain: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R V, W, X; Ec: 1.15.1.1 Engineered: Yes		Organism_scientific: Solanum Lycopersicum Organism_common: Tomato Organism_taxid: 4081 Gene: Sodcp.2 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pag8h
symmetry	Space Group: P 21 21 21	R_factor 0.220 R_Free 0.252
crystal cell	length a length b length c angle alpha angle beta angle gamma 142.033 144.523 192.178 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.10 Å
ligand	ZN	enzyme	Oxidoreductase E.C.1.15.1.1 BRENDA
Gene Ontology	Chain Function Process Component S, F, T, N, K, E, V, Q, M, C, L, A, J, O, W, X, P, B, H, D, R, I, G, U

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (525 Kb) [Save to disk] Biological Unit Coordinates (3km2.pdb1.gz) 49 Kb Biological Unit Coordinates (3km2.pdb2.gz) 49 Kb Biological Unit Coordinates (3km2.pdb3.gz) 50 Kb Biological Unit Coordinates (3km2.pdb4.gz) 49 Kb Biological Unit Coordinates (3km2.pdb5.gz) 50 Kb Biological Unit Coordinates (3km2.pdb6.gz) 50 Kb Biological Unit Coordinates (3km2.pdb7.gz) 50 Kb Biological Unit Coordinates (3km2.pdb8.gz) 49 Kb Biological Unit Coordinates (3km2.pdb9.gz) 49 Kb LPC: Ligand-Protein Contacts for 3KM2 CSU: Contacts of Structural Units for 3KM2 Structure Factors (1165 Kb) Retrieve 3KM2 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3KM2 from S2C, [Save to disk] Re-refined 3km2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3KM2 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3KM2

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3KM2, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3km2_I] [3km2_M] [3km2_D] [3km2_K] [3km2] [3km2_E] [3km2_B] [3km2_U] [3km2_G] [3km2_T] [3km2_N] [3km2_X] [3km2_J] [3km2_L] [3km2_O] [3km2_R] [3km2_C] [3km2_H] [3km2_V] [3km2_F] [3km2_W] [3km2_A] [3km2_Q] [3km2_S] [3km2_P] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 3KM2

Community annotation for 3KM2 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

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