3KOO Hydrolase date Nov 13, 2009
title Crystal Structure Of Soluble Epoxide Hydrolase
authors N.A.Farrow
compound source
Molecule: Epoxide Hydrolase 2
Chain: A
Synonym: Soluble Epoxide Hydrolase, Seh, Epoxide Hydratase, Epoxide Hydrolase, Ceh;
Ec: 3.3.2.10
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ephx2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 65 2 2
R_factor 0.213 R_Free 0.307
crystal
cell
length a length b length c angle alpha angle beta angle gamma
91.765 91.765 242.516 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.79 Å
ligand 24D BindingDB enzyme Hydrolase E.C.3.3.2.10 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceOptimization of piperidyl-ureas as inhibitors of soluble epoxide hydrolase., Eldrup AB, Soleymanzadeh F, Farrow NA, Kukulka A, De Lombaert S, Bioorg Med Chem Lett. 2010 Jan 15;20(2):571-5. Epub 2009 Nov 22. PMID:19969453
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (93 Kb) [Save to disk]
  • Biological Unit Coordinates (3koo.pdb1.gz) 173 Kb
  • LPC: Ligand-Protein Contacts for 3KOO
  • CSU: Contacts of Structural Units for 3KOO
  • Structure Factors (213 Kb)
  • Retrieve 3KOO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3KOO from S2C, [Save to disk]
  • Re-refined 3koo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3KOO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3KOO
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3KOO, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3koo_A] [3koo]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3KOO
  • Community annotation for 3KOO at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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