3KPZ	Transcription Hormone	date	Nov 17, 2009
title	Crystal Structure Of A Novel Vitamin D3 Analogue, Zk203278 S Dissociated Profile
authors	N.Rochel, D.Moras
compound		source
Molecule: Vitamin D3 Receptor Chain: A Fragment: Ligand Binding Domain, Residues 118-427 Synonym: Vdr, 1,25-Dihydroxyvitamin D3 Receptor, Nuclear Re Subfamily 1 Group I Member 1; Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Vdr, Nr1i1 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21de3 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28
symmetry	Space Group: P 21 21 21	R_factor 0.195 R_Free 0.228
crystal cell	length a length b length c angle alpha angle beta angle gamma 44.887 51.892 132.204 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.90 Å
ligand	ZNE	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Crystal structure of a vitamin D3 analog, ZK203278, showing dissociated profile., Rochel N, Moras D, Anticancer Res. 2012 Jan;32(1):335-9. PMID:22213324

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (48 Kb) [Save to disk] Biological Unit Coordinates (3kpz.pdb1.gz) 44 Kb LPC: Ligand-Protein Contacts for 3KPZ CSU: Contacts of Structural Units for 3KPZ Structure Factors (379 Kb) Retrieve 3KPZ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3KPZ from S2C, [Save to disk] Re-refined 3kpz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3KPZ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3KPZ

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3KPZ, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3kpz] [3kpz_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3KPZ: [HOLI ] by SMART

Other resources with information on 3KPZ

Community annotation for 3KPZ at PDBWiki (http://pdbwiki.org)

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