3KRA Transferase date Nov 18, 2009
title Mint Heterotetrameric Geranyl Pyrophosphate Synthase In Comp Magnesium
authors T.H.Chang, T.P.Ko, F.L.Hsieh, A.H.J.Wang
compound source
Molecule: Geranyl Diphosphate Synthase Large Subunit
Chain: A, D
Fragment: Unp Residues 84-377
Synonym: Gpps Large Subunit, Geranyl Pyrophosphate Synthase Subunit, Gpp Synthase Large Subunit;
Ec: 2.5.1.1
Engineered: Yes
Organism_scientific: Mentha X Piperita
Organism_common: Peppermint
Organism_taxid: 34256
Gene: Gpps Large Subunit
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet32

Molecule: Geranyl Diphosphate Synthase Small Subunit
Chain: B, C
Fragment: Unp Residues 49-313
Synonym: Gpps Small Subunit, Gpp Synthase Small Subunit
Ec: 2.5.1.1
Engineered: Yes

Organism_scientific: Mentha X Piperita
Organism_common: Peppermint
Organism_taxid: 34256
Gene: Gpps Small Subunit
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet37
symmetry Space Group: P 21 21 21
R_factor 0.176 R_Free 0.216
crystal
cell
length a length b length c angle alpha angle beta angle gamma
54.281 109.255 182.504 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand EDO, MG enzyme Transferase E.C.2.5.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D


Primary referenceStructure of a Heterotetrameric Geranyl Pyrophosphate Synthase from Mint (Mentha piperita) Reveals Intersubunit Regulation., Chang TH, Hsieh FL, Ko TP, Teng KH, Liang PH, Wang AH, Plant Cell. 2010 Feb 5. PMID:20139160
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (194 Kb) [Save to disk]
  • Biological Unit Coordinates (3kra.pdb1.gz) 187 Kb
  • Biological Unit Coordinates (3kra.pdb2.gz) 95 Kb
  • Biological Unit Coordinates (3kra.pdb3.gz) 95 Kb
  • LPC: Ligand-Protein Contacts for 3KRA
  • CSU: Contacts of Structural Units for 3KRA
  • Structure Factors (834 Kb)
  • Retrieve 3KRA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3KRA from S2C, [Save to disk]
  • Re-refined 3kra structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3KRA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3KRA
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3KRA, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3kra_D] [3kra_C] [3kra_A] [3kra] [3kra_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3KRA
  • Community annotation for 3KRA at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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