3KSM Transport Protein date Nov 23, 2009
title Crystal Structure Of Abc-Type Sugar Transport System, Peripl Component From Hahella Chejuensis
authors A.Bagaria, D.Kumaran, S.K.Burley, S.Swaminathan, New York Sgx Re Center For Structural Genomics (Nysgxrc)
compound source
Molecule: Abc-Type Sugar Transport System, Periplasmic Comp
Chain: A, B
Fragment: Abc-Type Sugar Transport
Engineered: Yes
 Organism_scientific: Hahella Chejuensis
Organism_taxid: 349521
Strain: Kctc 2396
Gene: Hch_06819
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Psgx3(Bc)
symmetry Space Group: P 1
R_factor 0.162 R_Free 0.203
crystal
cell
length a length b length c angle alpha angle beta angle gamma
37.439 47.712 79.723 103.49 90.49 91.06
method X-Ray Diffractionresolution 1.90 Å
ligand BDR, MSE enzyme
Gene HCH
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (97 Kb) [Save to disk]
  • Biological Unit Coordinates (3ksm.pdb1.gz) 90 Kb
  • Biological Unit Coordinates (3ksm.pdb2.gz) 46 Kb
  • Biological Unit Coordinates (3ksm.pdb3.gz) 46 Kb
  • LPC: Ligand-Protein Contacts for 3KSM
  • CSU: Contacts of Structural Units for 3KSM
  • Structure Factors (605 Kb)
  • Retrieve 3KSM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3KSM from S2C, [Save to disk]
  • Re-refined 3ksm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3KSM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3KSM
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3KSM, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ksm_B] [3ksm_A] [3ksm]
  • SWISS-PROT database: [Q2S7D2]
  • Domain organization of [Q2S7D2_HAHCH] by SWISSPFAM
    • Other resources with information on 3KSM
  • Community annotation for 3KSM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science