3KUL Transferase date Nov 27, 2009
title Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8)
authors J.R.Walker, L.Yermekbayeva, J.Kania, C.Bountra, J.Weigelt, C.H.Ar A.M.Edwards, A.Bochkarev, S.Dhe-Paganon, Structural Genomics C (Sgc)
compound source
Molecule: Ephrin Type-A Receptor 8
Chain: A
Fragment: Kinase Domain (Unp Residues 602-909)
Synonym: Tyrosine-Protein Kinase Receptor Eek, Eph- And Elk Kinase, Hek3;
Ec: 2.7.10.1
Engineered: Yes
Other_details: Tyr At Position 793
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Eek, Epha8, Hek3, Kiaa1459
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28-Mhl

Molecule: Ephrin Type-A Receptor 8
Chain: B
Fragment: Kinase Domain (Unp Residues 602-909)
Synonym: Tyrosine-Protein Kinase Receptor Eek, Eph- And Elk Kinase, Hek3;
Ec: 2.7.10.1
Engineered: Yes
Other_details: Ptr At Position 793

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Eek, Epha8, Hek3, Kiaa1459
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28-Mhl
symmetry Space Group: P 1 21 1
R_factor 0.187 R_Free 0.244
crystal
cell
length a length b length c angle alpha angle beta angle gamma
44.140 41.879 145.815 90.00 92.46 90.00
method X-Ray Diffractionresolution 2.15 Å
ligand BME, GOL, PTR, SO4 enzyme Transferase E.C.2.7.10.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (157 Kb) [Save to disk]
  • Biological Unit Coordinates (3kul.pdb1.gz) 76 Kb
  • Biological Unit Coordinates (3kul.pdb2.gz) 75 Kb
  • LPC: Ligand-Protein Contacts for 3KUL
  • CSU: Contacts of Structural Units for 3KUL
  • Structure Factors (433 Kb)
  • Retrieve 3KUL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3KUL from S2C, [Save to disk]
  • Re-refined 3kul structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3KUL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3KUL
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3KUL, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3kul] [3kul_A] [3kul_B]
  • SWISS-PROT database: [P29322]
  • Domain organization of [EPHA8_HUMAN] by SWISSPFAM
  • Domain found in 3KUL: [TyrKc ] by SMART
  • Other resources with information on 3KUL
  • Community annotation for 3KUL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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