3KVN Hydrolase date Nov 30, 2009
title Crystal Structure Of The Full-Length Autotransporter Esta Fr Pseudomonas Aeruginosa
authors B.Van Den Berg
compound source
Molecule: Esterase Esta
Chain: X, A
Ec: 3.1.1.1
Engineered: Yes
Organism_scientific: Pseudomonas Aeruginosa
Organism_taxid: 287
Gene: Esta, Papa, Pa5112
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 4 21 2
R_factor 0.204 R_Free 0.255
crystal
cell
length a length b length c angle alpha angle beta angle gamma
143.826 143.826 186.883 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand C8E enzyme Hydrolase E.C.3.1.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, X


Primary referenceCrystal Structure of a Full-Length Autotransporter., van den Berg B, J Mol Biol. 2010 Jan 11. PMID:20060837
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (419 Kb) [Save to disk]
  • Biological Unit Coordinates (3kvn.pdb1.gz) 207 Kb
  • Biological Unit Coordinates (3kvn.pdb2.gz) 209 Kb
  • LPC: Ligand-Protein Contacts for 3KVN
  • CSU: Contacts of Structural Units for 3KVN
  • Structure Factors (517 Kb)
  • Retrieve 3KVN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3KVN from S2C, [Save to disk]
  • Re-refined 3kvn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3KVN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3KVN
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3KVN, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3kvn] [3kvn_X] [3kvn_A]
  • SWISS-PROT database: [O33407]
  • Belongs to the autotransporter-1 (at-1) family according to TCDB.
  • Domain organization of [ESTA_PSEAE] by SWISSPFAM
  • Domain found in 3KVN: [Autotransporter ] by SMART
  • Other resources with information on 3KVN
  • Community annotation for 3KVN at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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