3KVX Transferase date Nov 30, 2009
title Jnk3 Bound To Aminopyrimidine Inhibitor, Sr-3562
authors J.E.Habel, J.D.Laughlin, P.Lograsso
compound source
Molecule: Mitogen-Activated Protein Kinase 10
Chain: A
Fragment: Residues 39-402
Synonym: Stress-Activated Protein Kinase Jnk3, C-Jun N-Term Kinase 3, Map Kinase P49 3f12;
Ec: 2.7.11.24
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mapk10, Jnk3, Jnk3a, Prkm10
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pdest14
symmetry Space Group: C 2 2 21
R_factor 0.220 R_Free 0.269
crystal
cell
length a length b length c angle alpha angle beta angle gamma
81.362 125.642 68.744 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand FMY, OCY BindingDB enzyme Transferase E.C.2.7.11.24 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSynthesis, Biological Evaluation, X-ray Structure, and Pharmacokinetics of Aminopyrimidine c-jun-N-terminal Kinase (JNK) Inhibitors., Kamenecka T, Jiang R, Song X, Duckett D, Chen W, Ling YY, Habel J, Laughlin JD, Chambers J, Figuera-Losada M, Cameron MD, Lin L, Ruiz CH, Lograsso PV, J Med Chem. 2009 Nov 30. PMID:19947601
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (61 Kb) [Save to disk]
  • Biological Unit Coordinates (3kvx.pdb1.gz) 52 Kb
  • LPC: Ligand-Protein Contacts for 3KVX
  • CSU: Contacts of Structural Units for 3KVX
  • Structure Factors (186 Kb)
  • Retrieve 3KVX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3KVX from S2C, [Save to disk]
  • Re-refined 3kvx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3KVX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3KVX
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3KVX, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3kvx] [3kvx_A]
  • SWISS-PROT database: [P53779]
  • Domain organization of [MK10_HUMAN] by SWISSPFAM
  • Domain found in 3KVX: [S_TKc ] by SMART
  • Other resources with information on 3KVX
  • Community annotation for 3KVX at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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