3KX4 Oxidoreductase date Dec 02, 2009
title Crystal Structure Of Bacillus Megaterium Bm3 Heme Domain Mut
authors H.M.Girvan, C.W.Levy, D.Leys, A.W.Munro
compound source
Molecule: Bifunctional P-450nadph-P450 Reductase
Chain: A, B
Fragment: Heme Domain (Unp Residues 2-471)
Synonym: Flavocytochrome P450 Bm3, Cytochrome P450(Bm-3), P Cytochrome P450 102, Nadph--Cytochrome P450 Reductase;
Ec: 1.14.14.1
Engineered: Yes
Mutation: Yes
Organism_scientific: Bacillus Megaterium
Organism_taxid: 1404
Gene: Cyp102a1, Cyp102
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Tg1
symmetry Space Group: P 1 21 1
R_factor 0.163 R_Free 0.210
crystal
cell
length a length b length c angle alpha angle beta angle gamma
58.540 152.830 59.710 90.00 94.64 90.00
method X-Ray Diffractionresolution 1.95 Å
ligand HEM enzyme Oxidoreductase E.C.1.14.14.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceGlutamate-haem ester bond formation is disfavoured in flavocytochrome P450 BM3: characterization of glutamate substitution mutants at the haem site of P450 BM3., Girvan HM, Levy CW, Williams P, Fisher K, Cheesman MR, Rigby SE, Leys D, Munro AW, Biochem J. 2010 Apr 14;427(3):455-66. PMID:20180779
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (173 Kb) [Save to disk]
  • Biological Unit Coordinates (3kx4.pdb1.gz) 83 Kb
  • Biological Unit Coordinates (3kx4.pdb2.gz) 83 Kb
  • LPC: Ligand-Protein Contacts for 3KX4
  • CSU: Contacts of Structural Units for 3KX4
  • Structure Factors (473 Kb)
  • Retrieve 3KX4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3KX4 from S2C, [Save to disk]
  • Re-refined 3kx4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3KX4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3KX4
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3KX4, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3kx4] [3kx4_A] [3kx4_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3KX4
  • Community annotation for 3KX4 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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