3KY2 Transferase date Dec 04, 2009
title Crystal Structure Of Fibroblast Growth Factor Receptor 1 Kin
authors J.H.Bae, T.J.Boggon, F.Tome, V.Mandiyan, I.Lax, J.Schlessinger
compound source
Molecule: Basic Fibroblast Growth Factor Receptor 1
Chain: A, B
Fragment: Kinase Domain (Unp Residues 458 To 765)
Synonym: Fgfr-1, Bfgf-R, Fms-Like Tyrosine Kinase 2, C-Fgr
Ec: 2.7.10.1
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fgfr1, Fgfbr, Flg, Flt2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.203 R_Free 0.252
crystal
cell
length a length b length c angle alpha angle beta angle gamma
211.973 49.821 66.529 90.00 107.49 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand SO4 enzyme Transferase E.C.2.7.10.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceAsymmetric receptor contact is required for tyrosine autophosphorylation of fibroblast growth factor receptor in living cells., Bae JH, Boggon TJ, Tome F, Mandiyan V, Lax I, Schlessinger J, Proc Natl Acad Sci U S A. 2010 Feb 16;107(7):2866-71. Epub 2010 Jan 26. PMID:20133753
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (102 Kb) [Save to disk]
  • Biological Unit Coordinates (3ky2.pdb1.gz) 53 Kb
  • Biological Unit Coordinates (3ky2.pdb2.gz) 47 Kb
  • LPC: Ligand-Protein Contacts for 3KY2
  • CSU: Contacts of Structural Units for 3KY2
  • Structure Factors (140 Kb)
  • Retrieve 3KY2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3KY2 from S2C, [Save to disk]
  • Re-refined 3ky2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3KY2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3KY2
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3KY2, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ky2_B] [3ky2] [3ky2_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3KY2: [TyrKc ] by SMART
  • Other resources with information on 3KY2
  • Community annotation for 3KY2 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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