3KYB Isomerase date Dec 05, 2009
title Structure Of Udp-Galactopyranose Mutase Bound To Flavin Mono
authors T.D.Gruber, M.C.Dimond, L.L.Kiessling, K.T.Forest
compound source
Molecule: Probable Udp-Galactopyranose Mutase
Chain: A, B
Ec: 5.4.99.9
Engineered: Yes
 Organism_scientific: Klebsiella Pneumoniae
Organism_taxid: 573
Strain: 01 (Atcc 13882)
Gene: Glf, Rfbd
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgem-Teasy
symmetry Space Group: P 41
R_factor 0.183 R_Free 0.221
crystal
cell
length a length b length c angle alpha angle beta angle gamma
93.800 93.800 128.800 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand FAD, FMN enzyme Isomerase E.C.5.4.99.9 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (141 Kb) [Save to disk]
  • Biological Unit Coordinates (3kyb.pdb1.gz) 133 Kb
  • LPC: Ligand-Protein Contacts for 3KYB
  • CSU: Contacts of Structural Units for 3KYB
  • Structure Factors (375 Kb)
  • Retrieve 3KYB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3KYB from S2C, [Save to disk]
  • Re-refined 3kyb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3KYB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3KYB
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3KYB, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3kyb_B] [3kyb] [3kyb_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3KYB
  • Community annotation for 3KYB at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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