3KYM Immune System date Dec 06, 2009
title Crystal Structure Of Li33 Igg2 Di-Fab
authors L.F.Silvian, R.B.Pepinsky, L.Walus
compound source
Molecule: Light Chain Li33 Igg2
Chain: A, C, E, G, I, K, M, O
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606
Expression_system: Cricetulus Griseus
Expression_system_taxid: 10029

Molecule: Heavy Chain Li33 Igg2
Chain: B, D, F, H, J, L, N, P
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_taxid: 9606
Expression_system: Cricetulus Griseus
Expression_system_taxid: 10029
symmetry Space Group: P 1
R_factor 0.259 R_Free 0.339
crystal
cell
length a length b length c angle alpha angle beta angle gamma
91.669 109.545 118.433 61.46 79.29 87.59
method X-Ray Diffractionresolution 2.62 Å
Primary referenceImproving the solubility of anti-LINGO-1 monoclonal antibody Li33 by isotype switching and targeted mutagenesis., Pepinsky RB, Silvian L, Berkowitz SA, Farrington G, Lugovskoy A, Walus L, Eldredge J, Capili A, Mi S, Graff C, Garber E, Protein Sci. 2010 Mar 2. PMID:20198683
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (526 Kb) [Save to disk]
  • Biological Unit Coordinates (3kym.pdb1.gz) 73 Kb
  • Biological Unit Coordinates (3kym.pdb2.gz) 73 Kb
  • Biological Unit Coordinates (3kym.pdb3.gz) 73 Kb
  • Biological Unit Coordinates (3kym.pdb4.gz) 73 Kb
  • Biological Unit Coordinates (3kym.pdb5.gz) 74 Kb
  • Biological Unit Coordinates (3kym.pdb6.gz) 73 Kb
  • Biological Unit Coordinates (3kym.pdb7.gz) 73 Kb
  • Biological Unit Coordinates (3kym.pdb8.gz) 73 Kb
  • CSU: Contacts of Structural Units for 3KYM
  • Structure Factors (1859 Kb)
  • Retrieve 3KYM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3KYM from S2C, [Save to disk]
  • Re-refined 3kym structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3KYM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3KYM
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3KYM, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3kym_E] [3kym_A] [3kym_J] [3kym_P] [3kym_B] [3kym_F] [3kym] [3kym_D] [3kym_I] [3kym_L] [3kym_K] [3kym_H] [3kym_M] [3kym_C] [3kym_G] [3kym_O] [3kym_N]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3KYM: [IG_like] [IGv ] by SMART
  • Other resources with information on 3KYM
  • Community annotation for 3KYM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science