3KYS	Transcription Protein Binding	date	Dec 07, 2009
title	Crystal Structure Of Human Yap And Tead Complex
authors	Z.Li, B.Zhao, P.Wang, F.Chen, Z.Dong, H.Yang, K.L.Guan, Y.Xu
compound		source
Molecule: Transcriptional Enhancer Factor Tef-1 Chain: A, C Fragment: Yap Binding Domain Synonym: Ntef-1,Protein Gt-Iic,Tea Domain Family Member 1,T Transcription Factor 13,Tcf-13; Engineered: Yes Other_details: X=P1l		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Tead1, Tcf13, Tef1 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Prsfduet-1
Molecule: 65 Kda Yes-Associated Protein Chain: B, D Fragment: Tead Binding Domain Synonym: Ranscriptional Coactivator Yap1,Yes-Associated Pro Protein Yorkie Homolog,Yes-Associated Protein Yap65 Homolog Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Yap1, Yap65 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet15b
symmetry	Space Group: P 21 21 21	R_factor 0.228 R_Free 0.266
crystal cell	length a length b length c angle alpha angle beta angle gamma 44.643 110.503 165.695 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.80 Å
ligand	P1L	enzyme
note	3KYS is a representative structure
Primary reference	Structural insights into the YAP and TEAD complex., Li Z, Zhao B, Wang P, Chen F, Dong Z, Yang H, Guan KL, Xu Y, Genes Dev. 2010 Feb 1;24(3):235-40. PMID:20123905

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (188 Kb) [Save to disk] Biological Unit Coordinates (3kys.pdb1.gz) 90 Kb Biological Unit Coordinates (3kys.pdb2.gz) 91 Kb LPC: Ligand-Protein Contacts for 3KYS CSU: Contacts of Structural Units for 3KYS Structure Factors (236 Kb) Retrieve 3KYS in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3KYS from S2C, [Save to disk] Re-refined 3kys structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3KYS in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3KYS

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3KYS, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3kys_D] [3kys_A] [3kys_B] [3kys_C] [3kys] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 3KYS

Community annotation for 3KYS at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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