3KZ3 Transcription date Dec 07, 2009
title A Structure Of A Lambda Repressor Fragment Mutant
authors M.Gruebele, F.Liu, Y.Gao
compound source
Molecule: Repressor Protein Ci
Chain: A, B
Fragment: Unp Residues 8-85
Engineered: Yes
Mutation: Yes
Organism_scientific: Enterobacteria Phage Lambda
Organism_common: Bacteriophage Lambda
Organism_taxid: 10710
Gene: Ci
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl-21
Expression_system_vector_type: Rosetta
symmetry Space Group: P 1 21 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
32.630 58.710 42.850 90.00 98.18 90.00
method X-Ray Diffractionresolution 1.64 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceA Survey of lambda Repressor Fragments from Two-State to Downhill Folding., Liu F, Gao YG, Gruebele M, J Mol Biol. 2010 Feb 6. PMID:20138892
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (34 Kb) [Save to disk]
  • Biological Unit Coordinates (3kz3.pdb1.gz) 30 Kb
  • Biological Unit Coordinates (3kz3.pdb2.gz) 15 Kb
  • Biological Unit Coordinates (3kz3.pdb3.gz) 15 Kb
  • CSU: Contacts of Structural Units for 3KZ3
  • Structure Factors (138 Kb)
  • Retrieve 3KZ3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3KZ3 from S2C, [Save to disk]
  • Re-refined 3kz3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3KZ3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3KZ3
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3KZ3, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3kz3_A] [3kz3] [3kz3_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3KZ3: [HTH_XRE ] by SMART
  • Other resources with information on 3KZ3
  • Community annotation for 3KZ3 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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