3L08 Transferase date Dec 09, 2009
title Structure Of Pi3k Gamma With A Potent Inhibitor: Gsk2126458
authors P.A.Elkins, E.M.Marrero
compound source
Molecule: Phosphatidylinositol-4,5-Bisphosphate 3-Kinase Ca Subunit Gamma Isoform;
Chain: A
Synonym: Pi3-Kinase P110 Subunit Gamma, Ptdins-3-Kinase Sub Pi3kgamma, Pi3k, P120-Pi3k;
Ec: 2.7.1.153
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pik3cg
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.198 R_Free 0.261
crystal
cell
length a length b length c angle alpha angle beta angle gamma
145.617 68.410 107.470 90.00 94.72 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand SO4, ZIG enzyme Transferase E.C.2.7.1.153 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDiscovery of GSK2126458, a Highly Potent Inhibitor of PI3K and the Mammalian Target of Rapamycin., Knight SD, Adams ND, Burgess JL, Chaudhari AM, Darcy MG, Donatelli CA, Luengo JI, Newlander KA, Parrish CA, Ridgers LH, Sarpong MA, Schmidt SJ, Van Aller GS, Carson JD, Diamond MA, Elkins PA, Gardiner CM, Garver E, Gilbert SA, Gontarek RR, Jackson JR, Kershner KL, Luo L, Raha K, Sherk CS, Sung CM, Sutton D, Tummino PJ, Wegrzyn RJ, Auger KR, Dhanak D, ACS Med Chem Lett. 2010 Jan 19;1(1):39-43. doi: 10.1021/ml900028r. eCollection, 2010 Apr 8. PMID:24900173
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (146 Kb) [Save to disk]
  • Biological Unit Coordinates (3l08.pdb1.gz) 274 Kb
  • Biological Unit Coordinates (3l08.pdb2.gz) 139 Kb
  • LPC: Ligand-Protein Contacts for 3L08
  • CSU: Contacts of Structural Units for 3L08
  • Structure Factors (215 Kb)
  • Retrieve 3L08 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3L08 from S2C, [Save to disk]
  • Re-refined 3l08 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3L08 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3L08
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3L08, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3l08] [3l08_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3L08: [PI3K_C2] [PI3K_rbd] [PI3Ka] [PI3Kc ] by SMART
    • Other resources with information on 3L08
  • Community annotation for 3L08 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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