3L0M Protein Binding date Dec 10, 2009
title Crystal Structure Of Rab1-Activation Domain And P4m Domain O Sidmdrra From Legionella
authors Y.Zhu, F.Shao
compound source
Molecule: Drra
Chain: A, B
Fragment: Rab1-Activation Domain, P4m Domain
Synonym: Sidm
Engineered: Yes
 Organism_scientific: Legionella Pneumophila
Organism_taxid: 446
Gene: Sidm
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: B834(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-6p-2
symmetry Space Group: P 41
R_factor 0.214 R_Free 0.241
crystal
cell
length a length b length c angle alpha angle beta angle gamma
144.337 144.337 102.280 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.45 Å
ligand MSE, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural mechanism of host Rab1 activation by the bifunctional Legionella type IV effector SidM/DrrA., Zhu Y, Hu L, Zhou Y, Yao Q, Liu L, Shao F, Proc Natl Acad Sci U S A. 2010 Mar 9;107(10):4699-704. Epub 2010 Feb 22. PMID:20176951
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (111 Kb) [Save to disk]
  • Biological Unit Coordinates (3l0m.pdb1.gz) 54 Kb
  • Biological Unit Coordinates (3l0m.pdb2.gz) 53 Kb
  • LPC: Ligand-Protein Contacts for 3L0M
  • CSU: Contacts of Structural Units for 3L0M
  • Structure Factors (215 Kb)
  • Retrieve 3L0M in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3L0M from S2C, [Save to disk]
  • Re-refined 3l0m structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3L0M in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3L0M
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3L0M, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3l0m_A] [3l0m] [3l0m_B]
  • SWISS-PROT database: [Q29ST3]
  • Domain organization of [Q29ST3_LEGPN] by SWISSPFAM
    • Other resources with information on 3L0M
  • Community annotation for 3L0M at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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