3L2V	Recombination Dna	date	Dec 15, 2009
title	Crystal Structure Of The Prototype Foamy Virus (Pfv) Intasom Complex With Manganese And Mk0518 (Raltegravir)
authors	S.Hare, S.S.Gupta, P.Cherepanov
compound		source
Molecule: Integrase Chain: A, B Synonym: In, P42in Engineered: Yes		Organism_scientific: Human Spumaretrovirus Organism_common: Sfvcpz(Hu) Organism_taxid: 11963 Strain: Hsrv2 Gene: Pol Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Pc2 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pssh6p-Pfv-Infl
Molecule: 5'-D(Aptptpgptpcpaptpgpgpapaptptpt A)-3'; Chain: C Engineered: Yes Other_details: 19 Nucleotide Preprocessed Pfv Donor Dna		Synthetic: Yes
Molecule: 5'-D(Tpapcpapapapaptptpcpcpaptpgpa 3'; Chain: D Engineered: Yes Other_details: 17 Nucleotide Preprocessed Pfv Donor Dna		Synthetic: Yes
symmetry	Space Group: P 41 21 2	R_factor 0.205 R_Free 0.232
crystal cell	length a length b length c angle alpha angle beta angle gamma 158.650 158.650 125.230 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.20 Å
ligand	GOL, MN, NH4, RLT, ZN	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	Retroviral intasome assembly and inhibition of DNA strand transfer., Hare S, Gupta SS, Valkov E, Engelman A, Cherepanov P, Nature. 2010 Jan 31. PMID:20118915

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (176 Kb) [Save to disk] Biological Unit Coordinates (3l2v.pdb1.gz) 331 Kb LPC: Ligand-Protein Contacts for 3L2V CSU: Contacts of Structural Units for 3L2V Structure Factors (1468 Kb) Retrieve 3L2V in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3L2V from S2C, [Save to disk] Re-refined 3l2v structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3L2V in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3L2V

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3L2V, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3l2v_D] [3l2v_C] [3l2v_A] [3l2v_B] [3l2v] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 3L2V

Community annotation for 3L2V at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---