3L4E Hydrolase date Dec 19, 2009
title 1.5a Crystal Structure Of A Putative Peptidase E Protein Fro Monocytogenes Egd-E
authors J.S.Brunzelle, O.Onopriyenko, A.Savchenko, W.F.Anderson, Center Structural Genomics Of Infectious Diseases (Csgid)
compound source
Molecule: Uncharacterized Peptidase Lmo0363
Chain: A
Ec: 3.4.21.-
Engineered: Yes
 Organism_scientific: Listeria Monocytogenes
Organism_taxid: 169963
Strain: Egd-E
Gene: Lmo0363
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)-Magic
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmcsg7
symmetry Space Group: P 65 2 2
R_factor 0.169 R_Free 0.222
crystal
cell
length a length b length c angle alpha angle beta angle gamma
67.821 67.821 155.169 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.50 Å
ligand MSE, SO4 enzyme Hydrolase E.C.3.4.21 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (82 Kb) [Save to disk]
  • Biological Unit Coordinates (3l4e.pdb1.gz) 78 Kb
  • LPC: Ligand-Protein Contacts for 3L4E
  • CSU: Contacts of Structural Units for 3L4E
  • Structure Factors (471 Kb)
  • Retrieve 3L4E in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3L4E from S2C, [Save to disk]
  • Re-refined 3l4e structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3L4E in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3L4E
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3L4E, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3l4e_A] [3l4e]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3L4E
  • Community annotation for 3L4E at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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