3L6D Oxidoreductase date Dec 23, 2009
title Crystal Structure Of Putative Oxidoreductase From Pseudomona Kt2440
authors V.N.Malashkevich, Y.Patskovsky, R.Toro, J.M.Sauder, S.K.Burley, S New York Sgx Research Center For Structural Genomics (Nysgx
compound source
Molecule: Putative Oxidoreductase
Chain: A, B
Engineered: Yes
 Organism_scientific: Pseudomonas Putida
Organism_taxid: 160488
Strain: Kt2440
Gene: Np_744942.1, Pp2798
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)Codon+Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Bc-Psgx3(Bc)
symmetry Space Group: P 1 21 1
R_factor 0.208 R_Free 0.260
crystal
cell
length a length b length c angle alpha angle beta angle gamma
84.342 37.647 104.252 90.00 93.35 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand MSE enzyme
Gene NP
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (102 Kb) [Save to disk]
  • Biological Unit Coordinates (3l6d.pdb1.gz) 94 Kb
  • LPC: Ligand-Protein Contacts for 3L6D
  • CSU: Contacts of Structural Units for 3L6D
  • Structure Factors (1556 Kb)
  • Retrieve 3L6D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3L6D from S2C, [Save to disk]
  • Re-refined 3l6d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3L6D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3L6D
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3L6D, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3l6d] [3l6d_A] [3l6d_B]
  • SWISS-PROT database: [Q88J51]
  • Domain organization of [Q88J51_PSEPK] by SWISSPFAM
    • Other resources with information on 3L6D
  • Community annotation for 3L6D at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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