3L6P	Viral Protein,Hydrolase	date	Dec 23, 2009
title	Crystal Structure Of Dengue Virus 1 Ns2bns3 Protease
authors	S.Chandramouli, J.S.Joseph, S.Daudenarde, J.Gatchalian, C.Cornil P.Kuhn
compound		source
Molecule: Fusion Protein Of Nonstructural Protein 2b And Nonstructural Protein 3; Chain: A Fragment: Ns2b Residues 1394-1440, Ns3 Protease Residues 14 Ec: 3.4.21.91,3.6.1.15,3.6.4.13,2.1.1.56,2.1.1.57,2.7.7.48 Engineered: Yes Mutation: Yes		Organism_scientific: Dengue Virus Type 1 (Strain Singapores2751990), Dengue Virus Type 1 (Strain Nauruwes Pac1974); Organism_common: Denv-1 Organism_taxid: 33741, 11059 Strain: Singapores2751990, Nauruwest Pac1974 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21 (De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28a-Tev
symmetry	Space Group: I 2 2 2	R_factor 0.239 R_Free 0.284
crystal cell	length a length b length c angle alpha angle beta angle gamma 56.721 60.848 161.644 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.20 Å
ligand	CD, NI, SO4	enzyme	Hydrolase E.C.3.4.21.91 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Serotype-specific structural differences in the protease-cofactor complexes of the dengue virus family., Chandramouli S, Joseph JS, Daudenarde S, Gatchalian J, Cornillez-Ty C, Kuhn P, J Virol. 2010 Mar;84(6):3059-67. Epub 2009 Dec 30. PMID:20042502

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (37 Kb) [Save to disk] Biological Unit Coordinates (3l6p.pdb1.gz) 61 Kb Biological Unit Coordinates (3l6p.pdb2.gz) 119 Kb LPC: Ligand-Protein Contacts for 3L6P CSU: Contacts of Structural Units for 3L6P Structure Factors (218 Kb) Retrieve 3L6P in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3L6P from S2C, [Save to disk] Re-refined 3l6p structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3L6P in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3L6P

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3L6P, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3l6p_A] [3l6p] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 3L6P

Community annotation for 3L6P at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---