3L6X Cell Adhesion date Dec 27, 2009
title Crystal Structure Of P120 Catenin In Complex With E-Cadherin
authors N.Ishiyama, S.H.Lee, S.Liu, G.Y.Li, M.J.Smith, L.F.Reichardt, M.
compound source
Molecule: Catenin Delta-1
Chain: A
Fragment: P120 Catenin Isoform 4a
Synonym: P120 Catenin, P120(Ctn), Cadherin-Associated Src S Cas, P120(Cas);
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ctnnd1, Kiaa0384
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-4t1

Molecule: E-Cadherin
Chain: B
Fragment: E-Cadherin Juxtamembrane Domain Core Region
Engineered: Yes

Synthetic: Yes
symmetry Space Group: P 31 2 1
R_factor 0.201 R_Free 0.234
crystal
cell
length a length b length c angle alpha angle beta angle gamma
92.403 92.403 171.890 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.40 Å
ligand SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDynamic and static interactions between p120 catenin and E-cadherin regulate the stability of cell-cell adhesion., Ishiyama N, Lee SH, Liu S, Li GY, Smith MJ, Reichardt LF, Ikura M, Cell. 2010 Apr 2;141(1):117-28. PMID:20371349
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (79 Kb) [Save to disk]
  • Biological Unit Coordinates (3l6x.pdb1.gz) 72 Kb
  • LPC: Ligand-Protein Contacts for 3L6X
  • CSU: Contacts of Structural Units for 3L6X
  • Structure Factors (470 Kb)
  • Retrieve 3L6X in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3L6X from S2C, [Save to disk]
  • Re-refined 3l6x structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3L6X in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3L6X
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3L6X, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3l6x_A] [3l6x_B] [3l6x]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3L6X: [ARM ] by SMART
  • Other resources with information on 3L6X
  • Community annotation for 3L6X at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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