3L7L Structural Protein date Dec 28, 2009
title Structure Of The Wall Teichoic Acid Polymerase Tagf, H444n + Minute Soak)
authors A.L.Lovering, N.C.J.Strynadka
compound source
Molecule: Teichoic Acid Biosynthesis Protein F
Chain: A, B, C, D
Fragment: Tagf
Engineered: Yes
Mutation: Yes
Organism_scientific: Staphylococcus Epidermidis
Organism_taxid: 176279
Strain: Rp62a
Gene: Serp1960, Tagf
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28b
symmetry Space Group: P 41 21 2
R_factor 0.193 R_Free 0.254
crystal
cell
length a length b length c angle alpha angle beta angle gamma
222.880 222.880 100.750 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.95 Å
ligand C2G, CL, EDO, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceStructure of the bacterial teichoic acid polymerase TagF provides insights into membrane association and catalysis., Lovering AL, Lin LY, Sewell EW, Spreter T, Brown ED, Strynadka NC, Nat Struct Mol Biol. 2010 May;17(5):582-9. Epub 2010 Apr 18. PMID:20400947
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (588 Kb) [Save to disk]
  • Biological Unit Coordinates (3l7l.pdb1.gz) 577 Kb
  • Biological Unit Coordinates (3l7l.pdb2.gz) 292 Kb
  • Biological Unit Coordinates (3l7l.pdb3.gz) 290 Kb
  • LPC: Ligand-Protein Contacts for 3L7L
  • CSU: Contacts of Structural Units for 3L7L
  • Structure Factors (404 Kb)
  • Retrieve 3L7L in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3L7L from S2C, [Save to disk]
  • Re-refined 3l7l structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3L7L in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3L7L
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3L7L, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3l7l_D] [3l7l_B] [3l7l_C] [3l7l_A] [3l7l]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3L7L
  • Community annotation for 3L7L at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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