3L8X Transferase date Jan 04, 2010
title P38 Alpha Kinase Complexed With A Pyrazolo-Pyrimidine Based
authors J.S.Sack
compound source
Molecule: Mitogen-Activated Protein Kinase 14
Chain: A
Synonym: Mitogen-Activated Protein Kinase P38 Alpha, Map Ki Alpha, Cytokine Suppressive Anti-Inflammatory Drug-Binding Csaid-Binding Protein, Csbp, Max-Interacting Protein 2, Map Mxi2, Sapk2a;
Ec: 2.7.11.24
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Csbp, Csbp1, Csbp2, Cspb1, Mapk14, Mxi2
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_cell_line: Bl21 De3
Expression_system_vector_type: Plasmid
symmetry Space Group: P 21 21 21
R_factor 0.225 R_Free 0.319
crystal
cell
length a length b length c angle alpha angle beta angle gamma
67.392 71.148 73.120 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand N4D BindingDB enzyme Transferase E.C.2.7.11.24 BRENDA
note 3L8X supersedes 3CG2
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referencePyrazolo-pyrimidines: A novel heterocyclic scaffold for potent and selective p38alpha inhibitors., Das J, Moquin RV, Pitt S, Zhang R, Shen DR, McIntyre KW, Gillooly K, Doweyko AM, Sack JS, Zhang H, Kiefer SE, Kish K, McKinnon M, Barrish JC, Dodd JH, Schieven GL, Leftheris K, Bioorg Med Chem Lett. 2008 Mar 10;. PMID:18359226
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (58 Kb) [Save to disk]
  • Biological Unit Coordinates (3l8x.pdb1.gz) 54 Kb
  • LPC: Ligand-Protein Contacts for 3L8X
  • CSU: Contacts of Structural Units for 3L8X
  • Structure Factors (288 Kb)
  • Retrieve 3L8X in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3L8X from S2C, [Save to disk]
  • Re-refined 3l8x structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3L8X in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3L8X
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3L8X, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3l8x] [3l8x_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3L8X: [S_TKc ] by SMART
  • Other resources with information on 3L8X
  • Community annotation for 3L8X at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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