3L8Z Oncoprotein date Jan 04, 2010
title H-Ras Wildtype New Crystal Form
authors I.C.Rosnizeck, T.Graf, M.Spoerner, J.Traenkle, D.Filchtinski, C.H L.Gremer, I.R.Vetter, A.Wittinghofer, B.Koenig, H.R.Kalbitzer
compound source
Molecule: Gtpase Hras
Chain: A
Fragment: Residues 1-166
Synonym: Transforming Protein P21, P21ras, H-Ras-1, C-H-Ras Gtpase Hras, N-Terminally Processed;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hras, Hras1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: H 3 2
R_factor 0.191 R_Free 0.220
crystal
cell
length a length b length c angle alpha angle beta angle gamma
88.082 88.082 133.391 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.44 Å
ligand CA, GNP, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStabilizing a weak binding state for effectors in the human ras protein by cyclen complexes., Rosnizeck IC, Graf T, Spoerner M, Trankle J, Filchtinski D, Herrmann C, Gremer L, Vetter IR, Wittinghofer A, Konig B, Kalbitzer HR, Angew Chem Int Ed Engl. 2010 May 17;49(22):3830-3. PMID:20401883
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (42 Kb) [Save to disk]
  • Biological Unit Coordinates (3l8z.pdb1.gz) 37 Kb
  • LPC: Ligand-Protein Contacts for 3L8Z
  • CSU: Contacts of Structural Units for 3L8Z
  • Structure Factors (537 Kb)
  • Retrieve 3L8Z in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3L8Z from S2C, [Save to disk]
  • Re-refined 3l8z structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3L8Z in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3L8Z
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3L8Z, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3l8z_A] [3l8z]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3L8Z: [RAS ] by SMART
    • Other resources with information on 3L8Z
  • Community annotation for 3L8Z at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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