3L9E Oxidoreductase date Jan 05, 2010
title Crystal Structures Of Holo And Cu-Deficient Cuznsod From Th Bombyx Mori And The Implications In Amyotrophic Lateral Scl
authors N.N.Zhang, Y.X.He, W.F.Li, F.Zhao, L.F.Yan, G.Z.Zhang, Y.B.T Y.Chen, C.Z.Zhou
compound source
Molecule: Superoxide Dismutase [Cu-Zn]
Chain: A, B, C, D
Ec: 1.15.1.1
Engineered: Yes
 Organism_scientific: Bombyx Mori
Organism_common: Silk Moth
Organism_taxid: 7091
Strain: P50
Gene: Sod1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a
symmetry Space Group: P 65
R_factor 0.201 R_Free 0.248
crystal
cell
length a length b length c angle alpha angle beta angle gamma
118.470 118.470 81.790 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.05 Å
ligand ZN enzyme Oxidoreductase E.C.1.15.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B
  • superoxide dismutase activit...
  • antioxidant activity


    • Primary referenceCrystal structures of holo and Cu-deficient Cu/Zn-SOD from the silkworm Bombyx mori and the implications in amyotrophic lateral sclerosis., Zhang NN, He YX, Li WF, Teng YB, Yu J, Chen Y, Zhou CZ, Proteins. 2010 Mar 1. PMID:20310068
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (101 Kb) [Save to disk]
  • Biological Unit Coordinates (3l9e.pdb1.gz) 50 Kb
  • Biological Unit Coordinates (3l9e.pdb2.gz) 49 Kb
  • LPC: Ligand-Protein Contacts for 3L9E
  • CSU: Contacts of Structural Units for 3L9E
  • Structure Factors (2160 Kb)
  • Retrieve 3L9E in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3L9E from S2C, [Save to disk]
  • Re-refined 3l9e structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
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  • Proteopedia, because life has more than 2D.
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    • Visual 3D analysis of 3L9E
  • Ramachandran plot from PDBSum
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  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3L9E, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3l9e_C] [3l9e] [3l9e_A] [3l9e_B] [3l9e_D]
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