3LAT Hydrolase date Jan 07, 2010
title Crystal Structure Of Staphylococcus Peptidoglycan Hydrolase
authors S.Zoll, T.Stehle
compound source
Molecule: Bifunctional Autolysin
Chain: A, B
Fragment: Unp Residues 303-515
Synonym: Peptidoglycan Hydrolase Amie, Atle, N-Acetylmuramo Alanine Amidase;
Ec: 3.5.1.28
Engineered: Yes
Organism_scientific: Staphylococcus Epidermidis
Organism_taxid: 1282
Strain: O-47
Gene: Atle
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta 2 (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex 4t-3
symmetry Space Group: P 43 21 2
R_factor 0.143 R_Free 0.165
crystal
cell
length a length b length c angle alpha angle beta angle gamma
99.453 99.453 148.783 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand BU1, CL, IMD, ZN enzyme Hydrolase E.C.3.5.1.28 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural basis of cell wall cleavage by a staphylococcal autolysin., Zoll S, Patzold B, Schlag M, Gotz F, Kalbacher H, Stehle T, PLoS Pathog. 2010 Mar 12;6(3):e1000807. PMID:20300605
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (163 Kb) [Save to disk]
  • Biological Unit Coordinates (3lat.pdb1.gz) 80 Kb
  • Biological Unit Coordinates (3lat.pdb2.gz) 80 Kb
  • LPC: Ligand-Protein Contacts for 3LAT
  • CSU: Contacts of Structural Units for 3LAT
  • Structure Factors (1180 Kb)
  • Retrieve 3LAT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3LAT from S2C, [Save to disk]
  • Re-refined 3lat structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3LAT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3LAT
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3LAT, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3lat_A] [3lat_B] [3lat]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3LAT: [Ami_2 ] by SMART
  • Other resources with information on 3LAT
  • Community annotation for 3LAT at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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