3LAX Ligase date Jan 07, 2010
title The Crystal Structure Of A Domain Of Phenylacetate-Coenzyme A Ligase From Bacteroides Vulgatus Atcc 8482
authors K.Tan, R.Wu, G.Cobb, A.Joachimiak, Midwest Center For Structural Genomics (Mcsg)
compound source
Molecule: Phenylacetate-Coenzyme A Ligase
Chain: A
Fragment: Residues 327-432
Engineered: Yes
 Organism_scientific: Bacteroides Vulgatus
Organism_taxid: 435590
Strain: Atcc 8482
Gene: Bacteroides Vulgatus, Bvu_1668
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Ppk1037
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmcsg19
symmetry Space Group: P 21 21 21
R_factor 0.174 R_Free 0.225
crystal
cell
length a length b length c angle alpha angle beta angle gamma
33.737 44.334 67.601 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.43 Å
ligand MSE enzyme
note 3LAX is a representative structure and supersedes 3GXS
Gene BVU
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (46 Kb) [Save to disk]
  • Biological Unit Coordinates (3lax.pdb1.gz) 42 Kb
  • LPC: Ligand-Protein Contacts for 3LAX
  • CSU: Contacts of Structural Units for 3LAX
  • Structure Factors (264 Kb)
  • Retrieve 3LAX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3LAX from S2C, [Save to disk]
  • Re-refined 3lax structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3LAX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3LAX
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3LAX, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3lax] [3lax_A]
  • SWISS-PROT database: [A6L0Y5]
  • Domain organization of [A6L0Y5_BACV8] by SWISSPFAM
    • Other resources with information on 3LAX
  • Community annotation for 3LAX at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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